R1.c: fresh real-app inventory RPCs, synthetic data only. Viewport/theme: N/A.
Ordered stages on each side: create project and managed worktree through RPC -> commit branch-only inventory -> fresh existing-worktree scan -> fresh populated-project-root scan -> remove worktree for B1/F1/F2.on/F3/R1.a.
The response skill has a path; slashCommands expose name and description, with no path field. Root command file identity is separately proven by the successful openat excerpts in scan-syscalls.txt.
No provider turn was sent; model and machine catalogs are omitted.

BEFORE 8ee7183e6c8a1c22a6698f4909ef7e2a423bec3a
Existing managed worktree:
{
  "start": "2026-11-10T17:06:36.656Z",
  "end": "2026-11-10T17:06:37.373Z",
  "method": "server.refreshProviders",
  "request": {
    "instanceId": "claudeAgent",
    "cwd": "/home/user/wt/pr-32471-cap2-before/.t3/worktrees/fixture-project/evidence-before-r3-81ea1418da4d9125",
    "fresh": true,
    "workspaceSnapshotsOnDemand": true,
    "providerCatalogsOnDemand": true
  },
  "responseExcerpt": {
    "instanceId": "claudeAgent",
    "workspaceSnapshots": [
      {
        "cwd": "/home/user/wt/pr-32471-cap2-before/.t3/worktrees/fixture-project/evidence-before-r3-81ea1418da4d9125",
        "checkedAt": "2026-11-10T17:06:36.659Z",
        "slashCommands": [
          {
            "name": "finalize",
            "description": "Branch-only fixture inventory (project)"
          },
          {
            "name": "finalize-command",
            "description": "Branch-only synthetic command inventory (project)"
          }
        ],
        "skills": [
          {
            "name": "finalize",
            "description": "Branch-only fixture inventory",
            "path": "/home/user/wt/pr-32471-cap2-before/.t3/worktrees/fixture-project/evidence-before-r3-81ea1418da4d9125/.claude/skills/finalize/SKILL.md",
            "scope": "project",
            "enabled": true
          }
        ]
      }
    ]
  }
}
Fresh populated project-root cwd request:
{
  "start": "2026-11-10T17:06:37.374Z",
  "end": "2026-11-10T17:06:38.099Z",
  "method": "server.refreshProviders",
  "request": {
    "instanceId": "claudeAgent",
    "cwd": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project",
    "fresh": true,
    "workspaceSnapshotsOnDemand": true,
    "providerCatalogsOnDemand": true
  },
  "responseExcerpt": {
    "instanceId": "claudeAgent",
    "workspaceSnapshots": [
      {
        "cwd": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project",
        "checkedAt": "2026-11-10T17:06:37.376Z",
        "slashCommands": [
          {
            "name": "finalize",
            "description": "Finalize the fixture change (project)"
          },
          {
            "name": "finalize-command",
            "description": "Finalize the synthetic command fixture (project)"
          }
        ],
        "skills": [
          {
            "name": "finalize",
            "description": "Finalize the fixture change",
            "path": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/skills/finalize/SKILL.md",
            "scope": "project",
            "enabled": true
          }
        ]
      }
    ]
  }
}
Verified root files:
/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/skills/finalize/SKILL.md
---
name: finalize
description: Finalize the fixture change
---
Review the synthetic fixture and finalize the change.

/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/commands/finalize-command.md
---
description: Finalize the synthetic command fixture
---
Review the synthetic fixture.


AFTER 5ac4ccb47fd2888646f1776445d701c504b87e1f
Existing managed worktree:
{
  "start": "2026-11-10T17:07:30.081Z",
  "end": "2026-11-10T17:07:32.669Z",
  "method": "server.refreshProviders",
  "request": {
    "instanceId": "claudeAgent",
    "cwd": "/home/user/wt/pr-32471-cap2-after/.t3/worktrees/fixture-project/evidence-after-r3-c377d729f7698838",
    "fresh": true,
    "workspaceSnapshotsOnDemand": true,
    "providerCatalogsOnDemand": true
  },
  "responseExcerpt": {
    "instanceId": "claudeAgent",
    "workspaceSnapshots": [
      {
        "cwd": "/home/user/wt/pr-32471-cap2-after/.t3/worktrees/fixture-project/evidence-after-r3-c377d729f7698838",
        "checkedAt": "2026-11-10T17:07:30.086Z",
        "slashCommands": [
          {
            "name": "finalize",
            "description": "Branch-only fixture inventory (project)"
          },
          {
            "name": "finalize-command",
            "description": "Branch-only synthetic command inventory (project)"
          }
        ],
        "skills": [
          {
            "name": "finalize",
            "description": "Branch-only fixture inventory",
            "path": "/home/user/wt/pr-32471-cap2-after/.t3/worktrees/fixture-project/evidence-after-r3-c377d729f7698838/.claude/skills/finalize/SKILL.md",
            "scope": "project",
            "enabled": true
          }
        ]
      }
    ]
  }
}
Fresh populated project-root cwd request:
{
  "start": "2026-11-10T17:07:32.669Z",
  "end": "2026-11-10T17:07:35.925Z",
  "method": "server.refreshProviders",
  "request": {
    "instanceId": "claudeAgent",
    "cwd": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project",
    "fresh": true,
    "workspaceSnapshotsOnDemand": true,
    "providerCatalogsOnDemand": true
  },
  "responseExcerpt": {
    "instanceId": "claudeAgent",
    "workspaceSnapshots": [
      {
        "cwd": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project",
        "checkedAt": "2026-11-10T17:07:32.676Z",
        "slashCommands": [
          {
            "name": "finalize",
            "description": "Finalize the fixture change (project)"
          },
          {
            "name": "finalize-command",
            "description": "Finalize the synthetic command fixture (project)"
          }
        ],
        "skills": [
          {
            "name": "finalize",
            "description": "Finalize the fixture change",
            "path": "/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/skills/finalize/SKILL.md",
            "scope": "project",
            "enabled": true
          }
        ]
      }
    ]
  }
}
Verified root files:
/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/skills/finalize/SKILL.md
---
name: finalize
description: Finalize the fixture change
---
Review the synthetic fixture and finalize the change.

/tmp/lead-32471-r2/evidence-capture-2/run-20261110T170228356308Z/fixture-project/.claude/commands/finalize-command.md
---
description: Finalize the synthetic command fixture
---
Review the synthetic fixture.


AI-assisted; verified with the tests and tools listed above.